RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01026 STRUCTURE OF THE SAM DOMAIN OF VTS1P IN COMPLEX WITH RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2ESE 23 PDB_01033 SOLUTION STRUCTURE OF THE INTERNAL LOOP OF HUMAN U65 H/ACA SNORNA 3' HAIRPIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EUY 34 PDB_01034 GNYA TETRANUCLEOTIDE LOOPS FOUND IN POLIOVIRUS ORIL BY IN VIVO SELEX (UN)EXPECTEDLY FORM A YNMG-LIKE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EVY 14 PDB_01035 CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS RNASE III (D44N) COMPLEXED WITH PRODUCT OF DOUBLE-STRANDED RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EZ6 56 PDB_01037 ASITE RNA + DESIGNER ANTIBIOTIC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F4T 44 PDB_01040 NMR SOLUTION OF HIV-1 LAI KISSING COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F4X 48 PDB_01043 SEQUENCE SPECIFIC RECOGNITION OF RNA HAIRPINS BY THE SAM DOMAIN OF VTS1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F8K 15 PDB_01044 CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F8S 44 PDB_01045 CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F8T 50 PDB_01046 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEAMINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCX 46

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)