RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01044 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01044 Molecule name [?]: CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2F8S Reference [?]: Y.R.YUAN,Y.PEI,H.Y.CHEN,T.TUSCHL,D.J.PATEL. A POTENTIAL PROTEIN-RNA RECOGNITION EVENT ALONG THE RISC-LOADING PATHWAY FROM THE STRUCTURE OF A. AEOLICUS ARGONAUTE WITH EXTERNALLY BOUND SIRNA.. STRUCTURE V. 14 1557 2006 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.00 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 44 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 12 Number of paired bases [?]: 32

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 16 Maximum length of a stem [?]: 10 Average length of a stem [?]: 8 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -11.9 Average estimated free energy [?]: -14.85 Minimum estimated free energy [?]: -17.8

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 6 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 6

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 1 Average number of free bases in internal loops: 1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features