RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01034 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01034 Molecule name [?]: GNYA TETRANUCLEOTIDE LOOPS FOUND IN POLIOVIRUS ORIL BY IN VIVO SELEX (UN)EXPECTEDLY FORM A YNMG-LIKE Source [?]: RCSB Protein Data Bank Source ID [?]: 2EVY Reference [?]: W.J.G.MELCHERS,J.ZOLL,M.TESSARI,D.V.BAKHMUTOV, A.P.GMYL,V.I.AGOL,H.A.HEUS. A GCUA TETRANUCLEOTIDE LOOP FOUND IN THE POLIOVIRUS ORIL BY IN VIVO SELEX (UN)EXPECTEDLY FORMS A YNMG-LIKE STRUCTURE: EXTENDING THE YNMG FAMILY WITH GYYA.. RNA V. 12 1671 2006 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 14 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 6 Average length of a stem [?]: 6 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -8.2 Average estimated free energy [?]: -8.2 Minimum estimated free energy [?]: -8.2

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features