RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01045 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01045 Molecule name [?]: CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2F8T Reference [?]: Y.R.YUAN,Y.PEI,H.Y.CHEN,T.TUSCHL,D.J.PATEL. A POTENTIAL PROTEIN-RNA RECOGNITION EVENT ALONG THE RISC-LOADING PATHWAY FROM THE STRUCTURE OF A. AEOLICUS ARGONAUTE WITH EXTERNALLY BOUND SIRNA.. STRUCTURE V. 14 1557 2006 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.10 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 50 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 46

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 23 Maximum length of a stem [?]: 23 Average length of a stem [?]: 23 Minimum length of a stem [?]: 23 Maximum estimated free energy [?]: -49.2 Average estimated free energy [?]: -49.2 Minimum estimated free energy [?]: -49.2

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features