RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01035 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01035 Molecule name [?]: CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS RNASE III (D44N) COMPLEXED WITH PRODUCT OF DOUBLE-STRANDED RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2EZ6 Reference [?]: J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH, X.JI. STRUCTURAL INSIGHT INTO THE MECHANISM OF DOUBLE-STRANDED RNA PROCESSING BY RIBONUCLEASE III.. CELL (CAMBRIDGE,MASS.) V. 124 355 2006 ASTM CELLB5 US ISSN 0092-8674 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.05 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 56 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 4 Number of paired bases [?]: 52

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 26 Maximum length of a stem [?]: 14 Average length of a stem [?]: 13 Minimum length of a stem [?]: 12 Maximum estimated free energy [?]: -17.7 Average estimated free energy [?]: -18.9 Minimum estimated free energy [?]: -20.1

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features