RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01033 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01033 Molecule name [?]: SOLUTION STRUCTURE OF THE INTERNAL LOOP OF HUMAN U65 H/ACA SNORNA 3' HAIRPIN Source [?]: RCSB Protein Data Bank Source ID [?]: 2EUY Reference [?]: M.KHANNA,H.WU,C.JOHANSSON,M.CAIZERGUES-FERRER, J.FEIGON. STRUCTURAL STUDY OF THE H/ACA SNORNP COMPONENTS NOP10P AND THE 3' HAIRPIN OF U65 SNORNA.. RNA V. 12 40 2006 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 34 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 6 Number of paired bases [?]: 28

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 14 Maximum length of a stem [?]: 8 Average length of a stem [?]: 7 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -8.9 Average estimated free energy [?]: -9.6 Minimum estimated free energy [?]: -10.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 2 Average number of free bases in internal loops: 2 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features