RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01130 CRYSTAL STRUCTURE OF IRON REGULATORY PROTEIN 1 IN COMPLEX WITH FERRITIN H IRE-RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IPY 60 PDB_01131 THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IRN 18 PDB_01132 THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IRO 18 PDB_01133 SOLUTION STRUCTURE OF THE APICAL STEM-LOOP OF THE HUMAN HEPATITIS B VIRUS ENCAPSIDATION SIGNAL Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IXY 27 PDB_01135 MS2-RNA HAIRPIN (C-7) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2IZ8 29 PDB_01136 MS2-RNA HAIRPIN (4ONE-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2IZ9 30 PDB_01137 MS2-RNA HAIRPIN (C-10) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2IZM 26 PDB_01138 MS2-RNA HAIRPIN (G-10) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2IZN 26 PDB_01145 STRUCTURAL BASIS OF RSMA/CSRA RNA RECOGNITION: STRUCTURE OF RSME BOUND TO THE SHINE-DALGARNO SEQUENC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2JPP 40 PDB_01152 SOLUTION STRUCTURE OF THE FRAMESHIFT-INDUCING RNA STEM-LOOP IN SIV Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2JTP 34

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)