RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01131 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01131 Molecule name [?]: THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2 Source [?]: RCSB Protein Data Bank Source ID [?]: 2IRN Reference [?]: B.S.TOLBERT,S.D.KENNEDY,S.J.SCHROEDER,T.R.KRUGH, D.H.TURNER. NMR STRUCTURES OF (RGCUGAGGCU)(2) AND (RGCGGAUGCU)(2): PROBING THE STRUCTURAL FEATURES THAT SHAPE THE THERMODYNAMIC STABILITY OF GA PAIRS(,).. BIOCHEMISTRY V. 46 1511 2007 ASTM BICHAW US ISSN 0006-2960 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 18 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -11 Average estimated free energy [?]: -11 Minimum estimated free energy [?]: -11

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 1 Average number of free bases in hairpin loops [?]: 1 Minimum number of free bases in hairpin loop [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features