RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01130 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01130 Molecule name [?]: CRYSTAL STRUCTURE OF IRON REGULATORY PROTEIN 1 IN COMPLEX WITH FERRITIN H IRE-RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2IPY Reference [?]: W.E.WALDEN,A.I.SELEZNEVA,J.DUPUY,A.VOLBEDA, J.C.FONTECILLA-CAMPS,E.C.THEIL,K.VOLZ. STRUCTURE OF DUAL FUNCTION IRON REGULATORY PROTEIN 1 COMPLEXED WITH FERRITIN IRE-RNA.. SCIENCE V. 314 1903 2006 ASTM SCIEAS US ISSN 0036-8075 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 60 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 20 Number of paired bases [?]: 40

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 20 Maximum length of a stem [?]: 5 Average length of a stem [?]: 5 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -6.3 Average estimated free energy [?]: -6.95 Minimum estimated free energy [?]: -7.6

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 6 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 6

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 3 Average number of free bases in internal loops: 2 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 2 Minimum internal loop absolute asymmetry: 2 Maximum internal loop relative asymmetry: 3 Average internal loop relative asymmetry: 3 Minimum internal loop relative asymmetry: 3

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features