RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01145 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01145 Molecule name [?]: STRUCTURAL BASIS OF RSMA/CSRA RNA RECOGNITION: STRUCTURE OF RSME BOUND TO THE SHINE-DALGARNO SEQUENC Source [?]: RCSB Protein Data Bank Source ID [?]: 2JPP Reference [?]: M.SCHUBERT,K.LAPOUGE,O.DUSS,F.C.OBERSTRASS, I.JELESAROV,D.HAAS,F.H.-T.ALLAIN. MOLECULAR BASIS OF MESSENGER RNA RECOGNITION BY THE SPECIFIC BACTERIAL REPRESSING CLAMP RSMA/CSRA. NAT.STRUCT.MOL.BIOL. V. 14 807 2007 US ISSN 1545-9993 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 40 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 12 Number of paired bases [?]: 28

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 14 Maximum length of a stem [?]: 7 Average length of a stem [?]: 7 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -15.4 Average estimated free energy [?]: -15.4 Minimum estimated free energy [?]: -15.4

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 6 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 6

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features