RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01047 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEOMYCIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCY 46 PDB_01048 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH RIBOSTAMYCIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCZ 92 PDB_01049 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH LIVIDOMYCIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FD0 46 PDB_01050 SOLUTION STRUCTURE OF A CONSERVED RNA HAIRPIN OF EEL LINE UNAL2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FDT 36 PDB_01051 THE STRUCTURE OF STEM LOOP IV OF TETRAHYMENA TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FEY 43 PDB_01056 SOLUTION STRUCTURE OF THE HELIX II TEMPLATE BOUNDARY ELEMENT FROM TETRAHYMENA TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FRL 23 PDB_01057 A DUAL MODE OF RNA RECOGNITION BY THE RBMY PROTEIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FY1 21 PDB_01059 NMR STRUCTURE OF THE AQUIFEX AEOLICUS TMRNA PSEUDOKNOT PK1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G1W 22 PDB_01060 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G32 64 PDB_01061 RNA STRUCTURE CONTAINING GU BASE PAIRS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G3S 80

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)