RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01061 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01061 Molecule name [?]: RNA STRUCTURE CONTAINING GU BASE PAIRS Source [?]: RCSB Protein Data Bank Source ID [?]: 2G3S Reference [?]: S.B.JANG,L.W.HUNG,M.S.JEONG,E.L.HOLBROOK,X.CHEN, D.H.TURNER,S.R.HOLBROOK. THE CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF AN RNA OCTAMER DUPLEX CONTAINING TANDEM G.U BASEPAIRS. BIOPHYS.J. V. 90 4530 2006 ASTM BIOJAU US ISSN 0006-3495 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 10 Length [?]: 80 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 5 Number of unpaired bases [?]: 0 Number of paired bases [?]: 80

Click on any header below for additional features.

Stem features Number of stems [?]: 5 Number of base pairs in stems [?]: 40 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -14.9 Average estimated free energy [?]: -14.9 Minimum estimated free energy [?]: -14.9

Hairpin loop features Number of hairpin loops [?]: 5 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features