RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01056 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01056 Molecule name [?]: SOLUTION STRUCTURE OF THE HELIX II TEMPLATE BOUNDARY ELEMENT FROM TETRAHYMENA TELOMERASE RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2FRL Reference [?]: R.J.RICHARDS,C.A.THEIMER,L.D.FINGER,J.FEIGON. STRUCTURE OF THE TETRAHYMENA THERMOPHILA TELOMERASE RNA HELIX II TEMPLATE BOUNDARY ELEMENT.. NUCLEIC ACIDS RES. V. 34 816 2006 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 23 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 5 Number of paired bases [?]: 18

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 9 Maximum length of a stem [?]: 9 Average length of a stem [?]: 9 Minimum length of a stem [?]: 9 Maximum estimated free energy [?]: -15.4 Average estimated free energy [?]: -15.4 Minimum estimated free energy [?]: -15.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AA non-canonical base pairs: 1

Pseudoknot features