RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01050 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01050 Molecule name [?]: SOLUTION STRUCTURE OF A CONSERVED RNA HAIRPIN OF EEL LINE UNAL2 Source [?]: RCSB Protein Data Bank Source ID [?]: 2FDT Reference [?]: Y.NOMURA,M.KAJIKAWA,S.BABA,S.NAKAZATO,T.IMAI, T.SAKAMOTO,N.OKADA,G.KAWAI. SOLUTION STRUCTURE AND FUNCTIONAL IMPORTANCE OF A CONSERVED RNA HAIRPIN OF EEL LINE UNAL2. NUCLEIC ACIDS RES. V. 34 5184 2006 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 36 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 10 Number of paired bases [?]: 26

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 13 Maximum length of a stem [?]: 7 Average length of a stem [?]: 6.5 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -8.8 Average estimated free energy [?]: -9.75 Minimum estimated free energy [?]: -10.7

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 7 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 2 Average number of free bases in internal loops: 1.5 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 1 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 2

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features