RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01051 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01051 Molecule name [?]: THE STRUCTURE OF STEM LOOP IV OF TETRAHYMENA TELOMERASE RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2FEY Reference [?]: Y.CHEN,J.FENDER,J.D.LEGASSIE,M.B.JARSTFER, T.M.BRYAN,G.VARANI. STRUCTURE OF STEM-LOOP IV OF TETRAHYMENA TELOMERASE RNA.. EMBO J. V. 25 3156 2006 ASTM EMJODG UK ISSN 0261-4189 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 43 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 17 Number of paired bases [?]: 26

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 13 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4.33 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -3.2 Average estimated free energy [?]: -5.7 Minimum estimated free energy [?]: -9.1

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 6 Average number of free bases in internal loops: 3 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 2 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 2

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of CU non-canonical base pairs: 1

Pseudoknot features