RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00938 FLOCK HOUSE VIRUS B2-DSRNA COMPLEX (P4122) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AZ2 36 PDB_00942 MS2 WILD-TYPE RNA STEMLOOP COMPLEXED WITH AN N87S MUTANT MS2 CAPSID Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2B2G 31 PDB_00944 GUANINE RIBOSWITCH C74U MUTANT BOUND TO 2,6-DIAMINOPURINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2B57 65 PDB_00945 COMPLETE RNA POLYMERASE II-RNA INHIBITOR COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2B63 31 PDB_00948 RNA RECOGNITION BY THE VTS1 SAM DOMAIN Synthetic RNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 2B6G 19 PDB_00949 STRUCTURE OF THE SMAUG RECOGNITION RNA ELEMENT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2B7G 19 PDB_00950 STRUCTURE OF HIV-1(LAI) GENOMIC RNA DIS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2B8R 46 PDB_00951 STRUCTURE OF HIV-1(MAL) GENOMIC RNA DIS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2B8S 46 PDB_00960 THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT SIRNA DUPLEX. Synthetic RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2BGG 29 PDB_00963 MS2 (N87A MUTANT)- RNA HAIRPIN COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BNY 28

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)