RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00948 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00948 Molecule name [?]: RNA RECOGNITION BY THE VTS1 SAM DOMAIN Source [?]: RCSB Protein Data Bank Source ID [?]: 2B6G Reference [?]: P.E.JOHNSON,L.W.DONALDSON. RNA RECOGNITION BY THE VTS1P SAM DOMAIN. NAT.STRUCT.MOL.BIOL. V. 13 177 2006 ASTM JMOBAK US ISSN 1545-9993 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SACCHAROMYCES CEREVISIAE Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 19 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00949 Number of domains [?]: 1 Number of unpaired bases [?]: 5 Number of paired bases [?]: 14

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 7 Maximum length of a stem [?]: 7 Average length of a stem [?]: 7 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -11 Average estimated free energy [?]: -11 Minimum estimated free energy [?]: -11

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features