RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00938 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00938 Molecule name [?]: FLOCK HOUSE VIRUS B2-DSRNA COMPLEX (P4122) Source [?]: RCSB Protein Data Bank Source ID [?]: 2AZ2 Reference [?]: J.A.CHAO,J.H.LEE,B.R.CHAPADOS,E.W.DEBLER, A.SCHNEEMANN,J.R.WILLIAMSON. DUAL MODES OF RNA-SILENCING SUPPRESSION BY FLOCK HOUSE VIRUS PROTEIN B2.. NAT.STRUCT.MOL.BIOL. V. 12 952 2005 US ISSN 1545-9993 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 36 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00937 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 36

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 18 Maximum length of a stem [?]: 18 Average length of a stem [?]: 18 Minimum length of a stem [?]: 18 Maximum estimated free energy [?]: -41.4 Average estimated free energy [?]: -41.4 Minimum estimated free energy [?]: -41.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features