RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00963 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00963 Molecule name [?]: MS2 (N87A MUTANT)- RNA HAIRPIN COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 2BNY Reference [?]: W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON, H.LAGO,C.J.ADAMS,D.S.PEABODY,S.E.PHILLIPS, N.J.STONEHOUSE,L.LILJAS,P.G.STOCKLEY. STRUCTURAL BASIS OF RNA BINDING DISCRIMINATION BETWEEN BACTERIOPHAGES QBETA AND MS2.. STRUCTURE V. 14 487 2006 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: BACTERIOPHAGE MS2 Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.00 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 28 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 18

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 9 Maximum length of a stem [?]: 3 Average length of a stem [?]: 2.25 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.1 Average estimated free energy [?]: -2.97 Minimum estimated free energy [?]: -3.3

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features