RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00942
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00942
Molecule name [?]:	MS2 WILD-TYPE RNA STEMLOOP COMPLEXED WITH AN N87S MUTANT MS2 CAPSID
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2B2G
Reference [?]:	W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON, H.LAGO,C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS, N.J.STONEHOUSE,L.LILJAS,P.G.STOCKLEY. STRUCTURAL BASIS OF RNA BINDING DISCRIMINATION BETWEEN BACTERIOPHAGES QBETA AND MS2. STRUCTURE V. 14 487 2006 ASTM STRUE6 UK ISSN 0969-2126
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 3.02 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	31
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	11
Number of paired bases [?]:	20

Click on any header below for additional features.

Stem features

Number of stems [?]:	4
Number of base pairs in stems [?]:	10
Maximum length of a stem [?]:	3
Average length of a stem [?]:	2.5
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-3.2
Average estimated free energy [?]:	-3.25
Minimum estimated free energy [?]:	-3.3

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	4
Average number of free bases in hairpin loops [?]:	4
Minimum number of free bases in hairpin loop [?]:	4

Bulge loop features

Number of bulge loops [?]:	2
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features