RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00959 COMPLEX BETWEEN PAROMOMYCIN DERIVATIVE JS4 AND THE 16S-RRNA A SITE Other RNA Unknown RCSB Protein Data Bank 2BEE 42 PDB_00960 THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT SIRNA DUPLEX. Synthetic RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2BGG 29 PDB_00961 CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SU Other rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2BH2 60 PDB_00963 MS2 (N87A MUTANT)- RNA HAIRPIN COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BNY 28 PDB_00964 MS2 (N87AE89K MUTANT)- RNA HAIRPIN COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BQ5 36 PDB_00965 MS2 (N87AE89K MUTANT)- VARIANT QBETA RNA HAIRPIN COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BS0 21 PDB_00966 MS2 (N87AE89K MUTANT)- QBETA RNA HAIRPIN COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BS1 23 PDB_00967 THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH WITH A TRNALEU TRANSCRIPT IN THE POST-EDI Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2BTE 156 PDB_00968 MS2-RNA HAIRPIN (5BRU-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2BU1 34 PDB_00969 THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2BYT 156

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)