RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00968 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00968 Molecule name [?]: MS2-RNA HAIRPIN (5BRU-5) COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 2BU1 Reference [?]: E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM, K.TARS,H.LAGO,N.J.STONEHOUSE,D.R.DAVIS, P.G.STOCKLEY,L.LILJAS. STRUCTURAL BASIS OF PYRIMIDINE SPECIFICITY IN THE MS2 RNA HAIRPIN-COAT-PROTEIN COMPLEX.. RNA V. 7 1616 2001 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: BACTERIOPHAGE MS2 Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.20 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 34 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00970 Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 24

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 12 Maximum length of a stem [?]: 4 Average length of a stem [?]: 3 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -3.3 Average estimated free energy [?]: -4.3 Minimum estimated free energy [?]: -5.3

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features