RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00967 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00967 Molecule name [?]: THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH WITH A TRNALEU TRANSCRIPT IN THE POST-EDI Source [?]: RCSB Protein Data Bank Source ID [?]: 2BTE Reference [?]: M.TUKALO,A.YAREMCHUK,R.FUKUNAGA,S.YOKOYAMA,S.CUSACK. THE CRYSTAL STRUCTURE OF LEUCYL-TRNA SYNTHETASE COMPLEXED WITH TRNALEU IN THE POST-TRANSFER-EDITING CONFORMATION.. NAT.STRUCT.MOL.BIOL. V. 12 923 2005 US ISSN 1545-9993 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: THERMUS THERMOPHILUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.90 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 156 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00969 Number of domains [?]: 2 Number of unpaired bases [?]: 60 Number of paired bases [?]: 96

Click on any header below for additional features.

Stem features Number of stems [?]: 10 Number of base pairs in stems [?]: 48 Maximum length of a stem [?]: 7 Average length of a stem [?]: 4.8 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -3.4 Average estimated free energy [?]: -10.16 Minimum estimated free energy [?]: -19

Hairpin loop features Number of hairpin loops [?]: 8 Maximum number of free bases in hairpin loops [?]: 11 Average number of free bases in hairpin loops [?]: 5.5 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 2 Average number of free bases in multi-loops: 0.8 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 2 Average multi-loop absolute asymmetry: 1.2 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 1 Average multi-loop relative asymmetry: 0.25 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 5 Minimum number of branches in multi-loops: 5

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features