RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01123 CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FI 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I2V 2958 PDB_01124 GAAA TETRALOOOP RECEPTOR COMPLEX WITH ASSOCIATED COBALT HEXAMMINE. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2I7E 86 PDB_01125 GAAA TETRALOOP RECEPTOR COMPLEX WITH ASSOCIATED MANGANESE IONS. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2I7Z 86 PDB_01126 CRYSTAL STRUCTURE OF PSEUDOURIDINE SYNTHASE RLUA: INDIRECT SEQUENCE READOUT THROUGH PROTEIN-INDUCED Other rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I82 79 PDB_01127 60KDA RO AUTOANTIGEN IN COMPLEX WITH A FRAGMENT OF MISFOLDED RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2I91 45 PDB_01128 SOLUTION STRUCTURE OF THE ROUS SARCOMA VIRUS NUCLEOCAPSID PROTEIN:UPSI RNA PACKAGING SIGNAL COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IHX 75 PDB_01129 CRYSTAL STRUCTURE OF PLAUTIA STALI INTESTINE VIRUS INTERGENIC REGION INTERNAL RIBOSOME ENTRY SITE RI IRES PLAUTIA STALI INTESTINE VIRUS RCSB Protein Data Bank 2IL9 267 PDB_01130 CRYSTAL STRUCTURE OF IRON REGULATORY PROTEIN 1 IN COMPLEX WITH FERRITIN H IRE-RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IPY 60 PDB_01131 THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IRN 18 PDB_01132 THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2IRO 18

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)