RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01127 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01127 Molecule name [?]: 60KDA RO AUTOANTIGEN IN COMPLEX WITH A FRAGMENT OF MISFOLDED RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2I91 Reference [?]: G.FUCHS,A.J.STEIN,C.FU,K.M.REINISCH,S.L.WOLIN. STRUCTURAL AND BIOCHEMICAL BASIS FOR MISFOLDED RNA RECOGNITION BY THE RO AUTOANTIGEN.. NAT.STRUCT.MOL.BIOL. V. 13 1002 2006 US ISSN 1545-9993 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.65 ANGSTROMS; ran through RNAview Number of molecules [?]: 4 Length [?]: 45 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 17 Number of paired bases [?]: 28

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 14 Maximum length of a stem [?]: 7 Average length of a stem [?]: 7 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -15.6 Average estimated free energy [?]: -15.6 Minimum estimated free energy [?]: -15.6

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 1.5 Minimum number of free bases in hairpin loop [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features