RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00882 CRYSTAL STRUCTURE OF 16 BASE PAIR RNA DUPLEX CONTAINING A C- A MISMATCH Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Z7F 48 PDB_00883 3'-END SPECIFIC RECOGNITION OF HISTONE MRNA STEM-LOOP BY 3'- EXONUCLEASE Other RNA HOMO SAPIENS RCSB Protein Data Bank 1ZBH 36 PDB_00884 SOLUTION STRUCTURE OF BIV TAR HAIRPIN COMPLEXED TO JDV TAT ARGININE-RICH MOTIF Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZBN 28 PDB_00885 STRUCTURE OF THE RNA SIGNAL ESSENTIAL FOR TRANSLATIONAL FRAMESHIFTING IN HIV-1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZC5 41 PDB_00886 HIV-1 DIS RNA SUBTYPE F- MONOCLINIC FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZCI 92 PDB_00887 MS2 COAT PROTEIN/RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDH 26 PDB_00888 RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDI 29 PDB_00889 STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDJ 16 PDB_00890 STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDK 38 PDB_00891 CONFORMATIONAL CHANGE OF PSEUDOURIDINE 55 SYNTHASE UPON ITS ASSOCIATION WITH RNA SUBSTRATE tRNA THERMOTOGA MARITIMA RCSB Protein Data Bank 1ZE2 44

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)