RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00882
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Format:

Molecule ID [?]:	PDB_00882
Molecule name [?]:	CRYSTAL STRUCTURE OF 16 BASE PAIR RNA DUPLEX CONTAINING A C- A MISMATCH
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1Z7F
Reference [?]:	C.M.GHERGHE,J.M.KRAHN,K.M.WEEKS. CRYSTAL STRUCTURES, REACTIVITY AND INFERRED ACYLATION TRANSITION STATES FOR 2'-AMINE SUBSTITUTED RNA.. J.AM.CHEM.SOC. V. 127 13622 2005 ASTM JACSAT US ISSN 0002-7863
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.10 ANGSTROMS; ran through RNAview
Number of molecules [?]:	3
Length [?]:	48
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00870, PDB_00881
Number of domains [?]:	1
Number of unpaired bases [?]:	16
Number of paired bases [?]:	32

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	16
Maximum length of a stem [?]:	16
Average length of a stem [?]:	16
Minimum length of a stem [?]:	16
Maximum estimated free energy [?]:	-23.1
Average estimated free energy [?]:	-23.1
Minimum estimated free energy [?]:	-23.1

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AC non-canonical base pairs:	2

Pseudoknot features