RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00883 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00883 Molecule name [?]: 3'-END SPECIFIC RECOGNITION OF HISTONE MRNA STEM-LOOP BY 3'- EXONUCLEASE Source [?]: RCSB Protein Data Bank Source ID [?]: 1ZBH Reference [?]: Y.CHENG,D.J.PATEL. STRUCTURAL BASIS FOR 3'-END SPECIFIC RECOGNITION OF HISTONE MRNA STEM-LOOP BY 3'-EXONUCLEASE, A HUMAN NUCLEASE THAT ALSO TARGETS SIRNA. TO BE PUBLISHED Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: HOMO SAPIENS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.00 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 36 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 12 Number of paired bases [?]: 24

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 12 Maximum length of a stem [?]: 6 Average length of a stem [?]: 6 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -13.3 Average estimated free energy [?]: -13.3 Minimum estimated free energy [?]: -13.3

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features