RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00887 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00887 Molecule name [?]: MS2 COAT PROTEIN/RNA COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 1ZDH Reference [?]: K.VALEGARD,J.B.MURRAY,N.J.STONEHOUSE, S.VAN DEN WORM,P.G.STOCKLEY,L.LILJAS. THE THREE-DIMENSIONAL STRUCTURES OF TWO COMPLEXES BETWEEN RECOMBINANT MS2 CAPSIDS AND RNA OPERATOR FRAGMENTS REVEAL SEQUENCE-SPECIFIC PROTEIN-RNA INTERACTIONS.. J.MOL.BIOL. V. 270 724 1997 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Viral & Phage RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: BACTERIOPHAGE MS2 Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 26 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 2 Average length of a stem [?]: 2 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.1 Average estimated free energy [?]: -2.7 Minimum estimated free energy [?]: -3.3

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features