RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00862 NMR STRUCTURE OF THE APOB MRNA STEM-LOOP AND ITS INTERACTION WITH THE C TO U EDITING APOBEC1 COMPLEM Other RNA Unknown RCSB Protein Data Bank 1YNG 31 PDB_00863 CRYSTAL STRUCTURE OF APRAMYCIN BOUND TO A RIBOSOMAL RNA A SITE OLIGONUCLEOTIDE Other rRNA Unknown RCSB Protein Data Bank 1YRJ 45 PDB_00864 LOCALIZATION AND DYNAMIC BEHAVIOR OF RIBOSOMAL PROTEIN L30E Other rRNA ORYZA SATIVA RCSB Protein Data Bank 1YSH 162 PDB_00865 SOLUTION STRUCTURE OF THE CENTRAL REGION OF THE HUMAN GLUR- B R/G PRE-MRNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YSV 27 PDB_00866 STRUCTURAL BASIS FOR 5'-END-SPECIFIC RECOGNITION OF THE GUIDE RNA STRAND BY THE A. FULGIDUS PIWI PRO Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YTU 19 PDB_00867 STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YTY 18 PDB_00868 RO AUTOANTIGEN COMPLEXED WITH RNAS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YVP 52 PDB_00869 HIV-1 DIS RNA SUBTYPE F- ZN SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YXP 46 PDB_00870 CRYSTAL STRUCTURE OF AN RNA DUPLEX CONTAINING A 2'-AMINE SUBSTITUTION AND A 2'-AMIDE PRODUCT PRODUCE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YY0 48 PDB_00871 CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE-STRANDED RNA AT 2.5-ANGST Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YYK 48

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)