RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00865 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00865 Molecule name [?]: SOLUTION STRUCTURE OF THE CENTRAL REGION OF THE HUMAN GLUR- B R/G PRE-MRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 1YSV Reference [?]: R.STEFL,F.H.ALLAIN. A NOVEL RNA PENTALOOP FOLD INVOLVED IN TARGETING ADAR2.. RNA V. 11 592 2005 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 27 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 3 Number of paired bases [?]: 24

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 12 Maximum length of a stem [?]: 12 Average length of a stem [?]: 12 Minimum length of a stem [?]: 12 Maximum estimated free energy [?]: -16.4 Average estimated free energy [?]: -16.4 Minimum estimated free energy [?]: -16.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 3 Average number of free bases in hairpin loops [?]: 3 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features