RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00868 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00868 Molecule name [?]: RO AUTOANTIGEN COMPLEXED WITH RNAS Source [?]: RCSB Protein Data Bank Source ID [?]: 1YVP Reference [?]: A.J.STEIN,G.FUCHS,C.FU,S.L.WOLIN,K.M.REINISCH. STRUCTURAL INSIGHTS INTO RNA QUALITY CONTROL: THE RO AUTOANTIGEN BINDS MISFOLDED RNAS VIA ITS CENTRAL CAVITY. CELL (CAMBRIDGE,MASS.) V. 121 529 2005 ASTM CELLB5 US ISSN 0092-8674 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.20 ANGSTROMS; ran through RNAview Number of molecules [?]: 6 Length [?]: 52 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 24 Number of paired bases [?]: 28

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 14 Maximum length of a stem [?]: 7 Average length of a stem [?]: 7 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -13.2 Average estimated free energy [?]: -13.2 Minimum estimated free energy [?]: -13.2

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features