RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00866 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00866 Molecule name [?]: STRUCTURAL BASIS FOR 5'-END-SPECIFIC RECOGNITION OF THE GUIDE RNA STRAND BY THE A. FULGIDUS PIWI PRO Source [?]: RCSB Protein Data Bank Source ID [?]: 1YTU Reference [?]: J.B.MA,Y.R.YUAN,G.MEISTER,Y.PEI,T.TUSCHL,D.J.PATEL. STRUCTURAL BASIS FOR 5'-END-SPECIFIC RECOGNITION OF GUIDE RNA BY THE A. FULGIDUS PIWI PROTEIN.. NATURE V. 434 666 2005 ASTM NATUAS UK ISSN 1476-4687 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 4 Length [?]: 19 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 5 Number of paired bases [?]: 14

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 7 Maximum length of a stem [?]: 4 Average length of a stem [?]: 3.5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.6 Average estimated free energy [?]: -5.65 Minimum estimated free energy [?]: -6.7

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 1.5 Minimum number of free bases in hairpin loop [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features