RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01037 ASITE RNA + DESIGNER ANTIBIOTIC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F4T 44 PDB_01038 ASITE RNA + DESIGNER ANTIBIOTIC Other RNA SYNTHETIC RCSB Protein Data Bank 2F4U 42 PDB_01039 30S RIBOSOME + DESIGNER ANTIBIOTIC 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2F4V 1511 PDB_01042 SOLUTION NMR STRUCTURE OF DOMAIN 5 FROM THE PYAIELLA LITTORALIS (PL) GROUP II INTRON GII Intron Unknown RCSB Protein Data Bank 2F88 34 PDB_01044 CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F8S 44 PDB_01050 SOLUTION STRUCTURE OF A CONSERVED RNA HAIRPIN OF EEL LINE UNAL2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FDT 36 PDB_01051 THE STRUCTURE OF STEM LOOP IV OF TETRAHYMENA TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FEY 43 PDB_01052 CRYSTAL STRUCTURE OF A MINIMAL, ALL RNA HAIRPIN RIBOZYME WITH MODIFICATIONS (G8DAP, U39C) AT PH 8.6 Hairp. Ribozyme Unknown RCSB Protein Data Bank 2FGP 61 PDB_01055 CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING A SITE Other rRNA Unknown RCSB Protein Data Bank 2FQN 43 PDB_01060 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G32 64

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)