RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01311 5'-R(*GP*UP*GP*CP*AP*CP*A)-D(P*C)-3' Other RNA Unknown RCSB Protein Data Bank 418D 16 PDB_01313 5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3' Other RNA Unknown RCSB Protein Data Bank 422D 24 PDB_01325 CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 468D 24 PDB_01326 CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 469D 24 PDB_01327 CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 470D 24 PDB_01328 CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 471D 24 PDB_01332 SOLUTION STRUCTURE OF HIV-1 REV PEPTIDE-RNA APTAMER COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 484D 27 PDB_01334 CATALYTIC RNA ENZYME-PRODUCT COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 488D 66 PDB_01337 MS2 PROTEIN CAPSID/RNA COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 5MSF 34 PDB_01338 F6 APTAMER MS2 COAT PROTEIN COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 6MSF 24

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)