RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01311 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01311 Molecule name [?]: 5'-R(*GP*UP*GP*CP*AP*CP*A)-D(P*C)-3' Source [?]: RCSB Protein Data Bank Source ID [?]: 418D Reference [?]: S.N.MITRA,R.BISWAS,K.SHI,M.SUNDARALINGAM. CRYSTAL STRUCTURE OF AN RNA DUPLEX [R(GUGCACA)DC]2 WITH 3'-DINUCLEOSIDE OVERHANGS FORMING A SUPERHELIX.. J.BIOMOL.STRUCT.DYN. V. 11 189 2000 ASTM JBSDD6 US ISSN 0739-1102 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.40 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 16 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 6 Average length of a stem [?]: 6 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -12 Average estimated free energy [?]: -12 Minimum estimated free energy [?]: -12

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features