RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01326 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01326 Molecule name [?]: CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 469D Reference [?]: M.TEPLOVA,G.MINASOV,V.TERESHKO,G.B.INAMATI, P.D.COOK,M.MANOHARAN,M.EGLI. CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O-(2-METHOXYETHYL)-RNA.. NAT.STRUCT.BIOL. V. 6 535 1999 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.70 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 24 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_01325, PDB_01327, PDB_01328 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 24

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 12 Maximum length of a stem [?]: 12 Average length of a stem [?]: 12 Minimum length of a stem [?]: 12 Maximum estimated free energy [?]: -24.1 Average estimated free energy [?]: -24.1 Minimum estimated free energy [?]: -24.1

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features