RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01040 NMR SOLUTION OF HIV-1 LAI KISSING COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F4X 48 PDB_01041 SOLUTION STRUCTURE OF A GAAG TETRALOOP IN SRP RNA FROM PYROCOCCUS FURIOSUS SRP RNA Unknown RCSB Protein Data Bank 2F87 12 PDB_01042 SOLUTION NMR STRUCTURE OF DOMAIN 5 FROM THE PYAIELLA LITTORALIS (PL) GROUP II INTRON GII Intron Unknown RCSB Protein Data Bank 2F88 34 PDB_01043 SEQUENCE SPECIFIC RECOGNITION OF RNA HAIRPINS BY THE SAM DOMAIN OF VTS1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F8K 15 PDB_01044 CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F8S 44 PDB_01045 CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F8T 50 PDB_01046 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEAMINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCX 46 PDB_01047 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEOMYCIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCY 46 PDB_01048 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH RIBOSTAMYCIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCZ 92 PDB_01049 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH LIVIDOMYCIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FD0 46

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)