RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01010 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU4 71 PDB_01011 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE E418N/E420N MUTANT COMPL Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU5 71 PDB_01012 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE E418N/E420N MUTANT COMPL Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU6 71 PDB_01013 COMPLEX STRUCTURE OF CCA-ADDING ENZYME, MINI-DCC AND CTP tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DVI 34 PDB_01014 2.2 A CRYSTAL STRUCTURE OF GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNA(GL Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2DXI 152 PDB_01015 A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2E5L 1527 PDB_01016 FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH A TEMPLATE-PRIMER RNA AND Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2E9R 15 PDB_01017 FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE RNA DEPENDENT IN COMPLEX WITH A TEMPLATE-PRIMER RNA AND Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2E9T 30 PDB_01018 FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA, ATP AND UTP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2E9Z 16 PDB_01019 RNA-DEPENDENT RNA POLYMERASE OF FOOT-AND-MOUTH DISEASE VIRUS IN COMPLEX WITH A TEMPLATE-PRIMER RNA A Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EC0 30

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)