RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01016 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01016 Molecule name [?]: FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH A TEMPLATE-PRIMER RNA AND Source [?]: RCSB Protein Data Bank Source ID [?]: 2E9R Reference [?]: C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS, E.DOMINGO,N.VERDAGUER. SEQUENTIAL STRUCTURES PROVIDE INSIGHTS INTO THE FIDELITY OF RNA REPLICATION. PROC.NATL.ACAD.SCI.USA V. 104 9463 2007 ASTM PNASA6 US ISSN 0027-8424 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.81 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 15 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 3 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 6 Average length of a stem [?]: 6 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -16.6 Average estimated free energy [?]: -16.6 Minimum estimated free energy [?]: -16.6

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features