RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00889 STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDJ 16 PDB_00890 STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 1ZDK 38 PDB_00891 CONFORMATIONAL CHANGE OF PSEUDOURIDINE 55 SYNTHASE UPON ITS ASSOCIATION WITH RNA SUBSTRATE tRNA THERMOTOGA MARITIMA RCSB Protein Data Bank 1ZE2 44 PDB_00892 CRYSTAL STRUCTURE OF A PATHOGENIC RNA: CUG REPEATS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZEV 72 PDB_00893 THE CRYSTAL STRUCTURE OF AN ALL-RNA MINIMAL HAIRPIN RIBOZYME WITH MUTANT G8I AT THE CLEAVAGE SITE Other Ribozyme Unknown RCSB Protein Data Bank 1ZFT 61 PDB_00894 THE STRUCTURE OF AN ALL-RNA MINIMAL HAIRPIN RIBOZYME WITH MUTATION G8A AT THE CLEAVAGE SITE Hairp. Ribozyme Unknown RCSB Protein Data Bank 1ZFV 61 PDB_00895 THE STRUCTURE OF A MINIMAL ALL-RNA HAIRPIN RIBOZYME WITH THE MUTANT G8U AT THE CLEAVAGE SITE Hairp. Ribozyme Unknown RCSB Protein Data Bank 1ZFX 61 PDB_00896 STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZH5 18 PDB_00897 THE STRUCTURE OF A RIBOSOMAL PROTEIN L1 IN COMPLEX WITH MRNA Other rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1ZHO 152 PDB_00901 GLUTAMINYL-TRNA SYNTHETASE COMPLEXED TO GLUTAMINE AND 2'DEOXY A76 GLUTAMINE TRNA Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1ZJW 74

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)