RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00896 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00896 Molecule name [?]: STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOA Source [?]: RCSB Protein Data Bank Source ID [?]: 1ZH5 Reference [?]: M.TEPLOVA,Y.R.YUAN,A.T.PHAN,L.MALININA,S.ILIN, A.TEPLOV,D.J.PATEL. STRUCTURAL BASIS FOR RECOGNITION AND SEQUESTRATION OF UUU(OH) 3' TEMINI OF NASCENT RNA POLYMERASE III TRANSCRIPTS BY LA, A RHEUMATIC DISEASE AUTOANTIGEN.. MOL.CELL V. 21 75 2006 ASTM MOCEFL US ISSN 1097-2765 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.85 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 18 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00867 Number of domains [?]: 1 Number of unpaired bases [?]: 10 Number of paired bases [?]: 8

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 4 Maximum length of a stem [?]: 2 Average length of a stem [?]: 2 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.5 Average estimated free energy [?]: -2.5 Minimum estimated free energy [?]: -2.5

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 1 Average number of free bases in internal loops: 1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features