RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00892 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00892 Molecule name [?]: CRYSTAL STRUCTURE OF A PATHOGENIC RNA: CUG REPEATS Source [?]: RCSB Protein Data Bank Source ID [?]: 1ZEV Reference [?]: B.H.MOOERS,J.S.LOGUE,J.A.BERGLUND. THE STRUCTURAL BASIS OF MYOTONIC DYSTROPHY FROM THE CRYSTAL STRUCTURE OF CUG REPEATS.. PROC.NATL.ACAD.SCI.USA V. 102 16626 2005 ASTM PNASA6 US ISSN 0027-8424 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.58 ANGSTROMS; ran through RNAview Number of molecules [?]: 4 Length [?]: 72 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 42 Number of paired bases [?]: 30

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 15 Maximum length of a stem [?]: 7 Average length of a stem [?]: 3.75 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -3.4 Minimum estimated free energy [?]: -6.8

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 12 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 12

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 3 Average number of free bases in internal loops: 2 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of UU non-canonical base pairs: 4

Pseudoknot features