RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01083 SOLUTION STRUCTURE OF THE POLIOVIRUS 3'-UTR Y-STEM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GRW 22 PDB_01084 TRANSLOCATION OF A TRNA WITH AN EXTENDED ANTICODON THROUGH THE RIBOSOME tRNA Unknown RCSB Protein Data Bank 2GV3 22 PDB_01085 SOLUTION STRUCTURE OF THE POLIOVIRUS 3'-UTR Y-STEM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GV4 22 PDB_01086 SOLUTION STRUCTURE OF A PURINE RICH HEXALOOP HAIRPIN BELONGING TO PGY/MDR1 MRNA AND TARGETED BY ANTI Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GVO 18 PDB_01087 CRYSTAL STRUCTURE OF THE ZA DOMAIN BOUND TO Z-RNA Other RNA HOMO SAPIENS RCSB Protein Data Bank 2GXB 13 PDB_01088 STRUCTURE OF THE 30S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MO 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2GY9 1716 PDB_01089 STRUCTURE OF THE 50S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MO 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2GYA 2848 PDB_01090 STRUCTURE OF THE 30S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC M 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2GYB 1716 PDB_01091 STRUCTURE OF THE 50S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC M 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2GYC 2848 PDB_01092 PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 2H0S 143

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)