RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01087 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01087 Molecule name [?]: CRYSTAL STRUCTURE OF THE ZA DOMAIN BOUND TO Z-RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2GXB Reference [?]: D.PLACIDO,B.A.BROWN,K.LOWENHAUPT,A.RICH, A.ATHANASIADIS. A LEFT-HANDED RNA DOUBLE HELIX BOUND BY THE ZALPHA DOMAIN OF THE RNA-EDITING ENZYME ADAR1.. STRUCTURE V. 15 395 2007 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: HOMO SAPIENS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.25 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 13 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 1 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 6 Average length of a stem [?]: 6 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -14 Average estimated free energy [?]: -14 Minimum estimated free energy [?]: -14

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features