RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01083
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_01083
Molecule name [?]:	SOLUTION STRUCTURE OF THE POLIOVIRUS 3'-UTR Y-STEM
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2GRW
Reference [?]:	J.ZOLL,M.TESSARI,F.J.M.VAN KUPPEVELD, W.J.G.MELCHERS,H.A.HEUS. BREAKING PSEUDO-TWOFOLD SYMMETRY IN THE POLIOVIRUS 3'-UTR Y-STEM BY RESTORING WATSON-CRICK BASE PAIRS.. RNA V. 13 781 2007 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	22
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	2
Number of paired bases [?]:	20

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	10
Maximum length of a stem [?]:	10
Average length of a stem [?]:	10
Minimum length of a stem [?]:	10
Maximum estimated free energy [?]:	-14.8
Average estimated free energy [?]:	-14.8
Minimum estimated free energy [?]:	-14.8

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AG non-canonical base pairs:	1
Total number of CU non-canonical base pairs:	1

Pseudoknot features