RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01053 CRYSTAL STRUCTURE OF RNASE Z/TRNA(THR) COMPLEX tRNA BACILLUS SUBTILIS RCSB Protein Data Bank 2FK6 53 PDB_01054 METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL- METHIONYL-TRNAFMET tRNA ESCHERICHIA COLI RCSB Protein Data Bank 2FMT 154 PDB_01055 CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING A SITE Other rRNA Unknown RCSB Protein Data Bank 2FQN 43 PDB_01056 SOLUTION STRUCTURE OF THE HELIX II TEMPLATE BOUNDARY ELEMENT FROM TETRAHYMENA TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FRL 23 PDB_01057 A DUAL MODE OF RNA RECOGNITION BY THE RBMY PROTEIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FY1 21 PDB_01058 SOLUTION STRUCTURE OF THE ANTICODON LOOP OF S. POMBE TRNAI INCLUDING THE NATURALLY OCCURRING N6-THRE tRNA Unknown RCSB Protein Data Bank 2G1G 17 PDB_01059 NMR STRUCTURE OF THE AQUIFEX AEOLICUS TMRNA PSEUDOKNOT PK1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G1W 22 PDB_01060 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G32 64 PDB_01061 RNA STRUCTURE CONTAINING GU BASE PAIRS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2G3S 80 PDB_01062 CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING SITE COMPLEXED WITH APRAMYCIN Other rRNA Unknown RCSB Protein Data Bank 2G5K 44

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)