RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00932 CLASS I GTP APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AU4 41 PDB_00933 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CON 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2AVY 1530 PDB_00934 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CON 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2AW4 2958 PDB_00935 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CON 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2AW7 1530 PDB_00936 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CON 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2AWB 2958 PDB_00937 FLOCK HOUSE VIRUS B2-DSRNA COMPLEX (P212121) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AZ0 36 PDB_00938 FLOCK HOUSE VIRUS B2-DSRNA COMPLEX (P4122) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AZ2 36 PDB_00939 CHARGED AND UNCHARGED TRNAS ADOPT DISTINCT CONFORMATIONS WHEN COMPLEXED WITH HUMAN TRYPTOPHANYL-TRNA tRNA HOMO SAPIENS RCSB Protein Data Bank 2AZX 144 PDB_00940 RNA STEMLOOP OPERATOR FROM BACTERIOPHAGE QBETA COMPLEXED WITH AN N87S,E89K MUTANT MS2 CAPSID Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 2B2D 12 PDB_00941 RNA STEMLOOP FROM BACTERIOPHAGE MS2 COMPLEXED WITH AN N87S, E89K MUTANT MS2 CAPSID Viral & Phage BACTERIOPHAGE MS2 RCSB Protein Data Bank 2B2E 30

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)