RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00940 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00940 Molecule name [?]: RNA STEMLOOP OPERATOR FROM BACTERIOPHAGE QBETA COMPLEXED WITH AN N87S,E89K MUTANT MS2 CAPSID Source [?]: RCSB Protein Data Bank Source ID [?]: 2B2D Reference [?]: W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON, H.LAGO,C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS, N.J.STONEHOUSE,L.LILJAS,P.G.STOCKLEY. STRUCTURAL BASIS OF RNA BINDING DISCRIMINATION BETWEEN BACTERIOPHAGES QBETA AND MS2. STRUCTURE V. 14 487 2006 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Viral & Phage RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: BACTERIOPHAGE MS2 Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.90 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 12 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 6 Number of paired bases [?]: 6

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 3 Maximum length of a stem [?]: 3 Average length of a stem [?]: 3 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.6 Average estimated free energy [?]: -4.6 Minimum estimated free energy [?]: -4.6

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 3 Average number of free bases in hairpin loops [?]: 3 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features