RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01080 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GQ5 64 PDB_01081 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GQ6 64 PDB_01082 CRYSTAL STRUCTURE OF AN RNA RACEMATE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GQ7 64 PDB_01083 SOLUTION STRUCTURE OF THE POLIOVIRUS 3'-UTR Y-STEM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GRW 22 PDB_01085 SOLUTION STRUCTURE OF THE POLIOVIRUS 3'-UTR Y-STEM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GV4 22 PDB_01086 SOLUTION STRUCTURE OF A PURINE RICH HEXALOOP HAIRPIN BELONGING TO PGY/MDR1 MRNA AND TARGETED BY ANTI Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2GVO 18 PDB_01096 SYNTHESIS, OXIDATION BEHAVIOR, CRYSTALLIZATION AND STRUCTURE OF 2'-METHYLSELENO GUANOSINE CONTAINING Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2H1M 32 PDB_01097 SOLUTION STRUCTURE OF THE TETRAHYMENA TELOMERASE RNA STEM IV TERMINAL LOOP Synthetic RNA TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 2H2X 21 PDB_01108 STRUCTURE OF THE AAGU TETRALOOP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2HNS 22 PDB_01111 CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO THIAMINE PYROPHOSPHATE, MANGANESE IONS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2HOJ 75

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)